hmmer2 (2.3.2+dfsg-7) unstable; urgency=medium

  * Drop hmmer2-pvm package
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Repository, Repository-Browse.
  * Remove obsolete field Name from debian/upstream/metadata (already present in
    machine-readable debian/copyright).
  * Use NOTES as upstream changelog and install 00README
  * Cleanup after running build time test

 -- Andreas Tille <tille@debian.org>  Wed, 12 Aug 2020 11:44:30 +0200

hmmer2 (2.3.2+dfsg-6) unstable; urgency=medium

  * Update watch file
  * Update d/copyright
  * Stick to debhelper 10 (in compat level 11 dh_auto_configure
    passes --runstatedir=/run to ./configure.  This causes FTBFS.)
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1

 -- Andreas Tille <tille@debian.org>  Mon, 24 Sep 2018 11:34:02 +0200

hmmer2 (2.3.2+dfsg-5) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata: Added refs to OMICtoos,
    bio.tools, RRID

  [ Andreas Tille ]
  * Build-Depends: rename
    Closes: #874042
  * Standards-Version: 4.1.0 (no chaanges needed)
  * Drop autotools-dev

 -- Andreas Tille <tille@debian.org>  Sun, 03 Sep 2017 21:50:24 +0200

hmmer2 (2.3.2+dfsg-4) unstable; urgency=medium

  * Team upload.
  * Use -ffloat-store on i386 to fix FTBFS.
    Thanks to Aaron M. Ucko for the hint.
    Closes: #865099

 -- Sascha Steinbiss <satta@debian.org>  Tue, 04 Jul 2017 23:08:03 +0200

hmmer2 (2.3.2+dfsg-3) unstable; urgency=medium

  * Upload to unstable

 -- Andreas Tille <tille@debian.org>  Mon, 19 Jun 2017 09:33:45 +0200

hmmer2 (2.3.2+dfsg-2) experimental; urgency=medium

  * Build libhmmer.a using -fPIC to enable linking with other programs
    like psortb

 -- Andreas Tille <tille@debian.org>  Wed, 19 Apr 2017 09:11:29 +0200

hmmer2 (2.3.2+dfsg-1) experimental; urgency=medium

  * Link against libsquid instead of code copy
  * d/rules: drop unneeded get-orig-source target
  * debhelper 10
  * Remove SWISS-PROT copyrighted files in tutorial

 -- Andreas Tille <tille@debian.org>  Thu, 13 Apr 2017 08:57:30 +0200

hmmer2 (2.3.2-13) unstable; urgency=medium

  * Fixed watch file
  * Provide links to original names of tools that have vanished in hmmer3
    This is used by bioperl-run
  * Fix spelling in manpage

 -- Andreas Tille <tille@debian.org>  Tue, 17 Jan 2017 17:19:44 +0100

hmmer2 (2.3.2-12) unstable; urgency=medium

  * Team upload.
  * Make build reproducible.
    - Remove build directory from installed Makefile.

 -- Sascha Steinbiss <satta@debian.org>  Fri, 09 Sep 2016 19:58:20 +0000

hmmer2 (2.3.2-11) unstable; urgency=medium

  * Team upload.
  * Add missing dependency to autopkgtest.
  * Make build reproducible. Thanks to Chris Lamb for the patch.
    Closes: #828065

 -- Sascha Steinbiss <satta@debian.org>  Fri, 24 Jun 2016 15:22:40 +0000

hmmer2 (2.3.2-10) unstable; urgency=medium

  * Team upload.

  [ Canberk Koç ]
  * autopkgtests added
  * debian/rules:
    - added example files

  [ Afif Elghraoui ]
  * Set VCS URLs to point to git repository
  * Bump Standards-Version to 3.9.8

  [ Andreas Tille ]
  * Clean up Uploaders from inactive maintainers
  * Better hardening

 -- Canberk Koç <canberkkoc@gmail.com>  Thu, 16 Jun 2016 22:01:44 +0300

hmmer2 (2.3.2-9) unstable; urgency=medium

  * debhelper 9
  * cme fix dpkg-control
  * document removed PDF in Files-Excluded instead of README.source
  * slight DEP5 fix

 -- Andreas Tille <tille@debian.org>  Fri, 08 Jan 2016 13:23:34 +0100

hmmer2 (2.3.2-8) unstable; urgency=medium

  * Use autotools-dev for arm64.

 -- Laszlo Kajan <lkajan@debian.org>  Sat, 13 Sep 2014 21:21:54 +0200

hmmer2 (2.3.2-7) unstable; urgency=low

  * Team upload
  * debian/control:
    - Removed myself from the Uploaders.
    - Removed obsolete DM-Upload-Allowed field.
    - Use canonical VCS URLs.
    - Normalised using config-model-edit.
    - Build-depend on libperl4-corelibs-perl (Closes: #730921).
  * Conforms with Policy 3.9.5.

 -- Charles Plessy <plessy@debian.org>  Sun, 01 Dec 2013 09:26:43 +0900

hmmer2 (2.3.2-6) unstable; urgency=low

  [Charles Plessy]
  * Enabled upstream checks in debian/rules.
  * Documented how the package is tested in debian/README.Debian
  * Switched Debhelper to mode 7 (debian/compat, debian/control).
  * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
  * Checked conformance with Policy 3.8.3 and incremented Standards-Version
    in debian/control to reflect it.

  [Laszlo Kajan]
  * Debhelper 8.
  * Policy version 3.9.3.
  * Renaming hmmer version 2 to hmmer2 in order to allow coexistence with
    hmmer (>=3) in wheezy.
  * Renaming binaries and man pages:

     hmmalign     => hmm2align
     hmmbuild     => hmm2build
     hmmcalibrate => hmm2calibrate
     hmmconvert   => hmm2convert
     hmmemit      => hmm2emit
     hmmfetch     => hmm2fetch
     hmmindex     => hmm2index
     hmmpfam      => hmm2pfam
     hmmsearch    => hmm2search

     hmmcalibrate-pvm => hmm2calibrate-pvm
     hmmpfam-pvm      => hmm2pfam-pvm
     hmmsearch-pvm    => hmm2search-pvm

    in order to allow coexistence with those from hmmer (>=3).
    (Closes: #680539)
  * debian/rules: remove binary without source documentation
    Userguide.pdf in get-orig-source target

 -- Laszlo Kajan <lkajan@rostlab.org>  Mon, 09 Jul 2012 17:46:31 +0200

hmmer (2.3.2-5) unstable; urgency=low

  * Changed the doc-base section according to the new policy.
  * debian/control:
    - Added myself as Uploader.
    - Increased priority to `optional'
    - Standards-Version: 3.8.0 (no changes needed)

 -- Charles Plessy <plessy@debian.org>  Sun, 06 Jul 2008 23:49:23 +0900

hmmer (2.3.2-4) unstable; urgency=low

  * Moved Homepage tag from long description to tags
  * Removed XB-Tag because it is actually not used by debtags
  * Added myself as Uploader
  * Standards-Version: 3.7.3 (no changes needed)
  * Added Vcs-Browser, Vcs-Svn
  * DM-Upload-Allowed: yes

 -- Andreas Tille <tille@debian.org>  Tue, 26 Feb 2008 20:40:17 +0100

hmmer (2.3.2-3) unstable; urgency=low

  * Updated hmmer homepage (Closes: #435396). Thanks to Charles Plessy;
  * Updated watch file;
  * Moved Matthew Vernon to Uploaders and set Maintainer to Debian-Med
    Packaging Team <debian-med-packaging@lists.alioth.debian.org>;
  * Downgraded biosquid to recommends.

 -- Nelson A. de Oliveira <naoliv@debian.org>  Tue, 31 Jul 2007 15:15:23 -0300

hmmer (2.3.2-2) unstable; urgency=medium

  * Changed my email address;
  * Changing priority to extra, instead optional (hmmer has a dependency on
    pvm and libpmv3 -- Policy 2.5);
  * Added tags on debian/control;
  * Medium urgency to get the package with the correct priority on Etch.

 -- Nelson A. de Oliveira <naoliv@debian.org>  Wed,  6 Dec 2006 16:27:06 -0200

hmmer (2.3.2-1) unstable; urgency=low

  * New upstream version (Closes: #261293);
  * Documentation is split in a new package (Closes: #233374, #175481);
  * "getseq" is not shipped anymore with hmmer, since it was renamed to
    "sfetch" (Closes: #197658);
  * New package hmmer-pvm, with PVM enabled binaries;
  * The package is again non-Debian native;
  * Using CDBS;
  * Using debhelper compatibility level 5;
  * Updated Standards-Version to 3.7.2;
  * Added doc-base and watch file;
  * Updated copyright file;
  * Added me as co-maintainer.
    From Matthew Vernon:
    "If you're keen to take hmmer, take it; I'm writing up my thesis at the
    moment, so my time for Debian is somewhat limited; I took on hmmer
    because it was orphaned at the time, and I wanted it to stay in the
    distribution."

 -- Nelson A. de Oliveira <naoliv@gmail.com>  Tue, 15 Aug 2006 17:30:32 -0300

hmmer (2.1.4) unstable; urgency=low

  * Change section to science

 -- Matthew Vernon <matthew@debian.org>  Tue, 10 Apr 2001 02:51:17 +0100

hmmer (2.1.3) unstable; urgency=low

  * Move from /usr/man to /usr/share/man (closes: #91171)
  * Move from /usr/doc to /usr/share/doc (closes: #91494)

 -- Matthew Vernon <matthew@debian.org>  Mon, 09 Apr 2001 16:12:21 +0100

hmmer (2.1.2) unstable; urgency=low

  * New maintainer

 -- Matthew Vernon <matthew@debian.org>  Tue, 07 Dec 1999 16:30:35 +0000

hmmer (2.1.1-1) unstable; urgency=low

  * New upstream version.

 -- John Lapeyre <lapeyre@physics.arizona.edu>  Tue, 30 Mar 1999 16:50:05 -0700

hmmer (2.0-1) unstable; urgency=low

  * Initial Release.

 -- John Lapeyre <lapeyre@physics.arizona.edu>  Thu, 13 Aug 1998 21:48:53 -0700
