Package: parsnp
Version: 1.5.4+dfsg-1
Architecture: mips64el
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1927
Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 5.2), python3:any, python3-numpy, fasttree, harvest-tools, mummer, phipack, python3, raxml
Recommends: python3-dendropy
Section: science
Priority: optional
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
 Parsnp was designed to align the core genome of hundreds to thousands of
 bacterial genomes within a few minutes to few hours. Input can be both
 draft assemblies and finished genomes, and output includes variant (SNP)
 calls, core genome phylogeny and multi-alignments. Parsnp leverages
 contextual information provided by multi-alignments surrounding SNP
 sites for filtration/cleaning, in addition to existing tools for
 recombination detection/filtration and phylogenetic reconstruction.
